Confused about 1099s, payroll, and contractor payments? Learn how startup founders can avoid costly IRS mistakes with this simple compliance guide from Blu Hat Bookkeeping.
Let’s start with a scene almost every startup founder faces. You finally hire your first people. A developer. A marketer. A virtual assistant. Maybe your buddy from college who “helps out with sales.” You send them payments through Zelle, PayPal, Venmo, or ACH. You figure: “Hey, I’ll just deal with taxes later. We’re a startup. We’re flexible.” Then comes January. Then comes the IRS. Suddenly, words like 1099, W-2, contractor classification, withholding, and penalties come flying at you like a swarm of angry bees. Welcome to one of the most dangerous compliance traps for startups.
The Truth Nobody Tells Startup Founders
When it comes to paying people, most startups make two fatal assumptions:
1️⃣ “They’re not my employee if I say they’re not.”
2️⃣ “I’ll figure out the tax stuff later.”
Both are 100% wrong. And both can trigger IRS penalties that hit your cash flow hard. The mistake you make today becomes the regret you pay for tomorrow. Let’s fix this before you end up in the IRS penalty box.
Who’s a Contractor? Who’s an Employee? Why Does It Matter?
The IRS cares deeply about worker classification, far more than most founders realize.
• Employees (W-2): You control how, when, and where they work. You handle payroll taxes, withholdings, and benefits.
• Independent Contractors (1099): They control their own schedule, tools, methods, and often work for multiple clients.
👉 You don’t get to decide which one they are. The IRS uses a 3-factor test: behavioral control, financial control, and relationship type. Misclassify? You owe back taxes, penalties, interest, and potentially legal fees.
The 1099 Rules (Don’t Ignore These)
If you pay a contractor:
• $600 or more in a calendar year
• And they’re not incorporated (usually)
👉 You must file Form 1099-NEC with the IRS and provide a copy to the contractor by January 31st.
Failure to file? Penalties start small and grow fast:
• Missed filings: $50–$280 per form
• Intentional disregard? Up to $630 per form. No max limit.
Payroll = More Rules (But Safer in Many Cases)
If you hire employees:
• You must withhold federal and state income taxes.
• You pay employer-side Social Security and Medicare taxes.
• You file quarterly payroll tax returns.
• You issue W-2s by January 31st.
👉 But you also avoid misclassification risk. Many startups avoid payroll early because it “feels complicated.” That’s a dangerous shortcut.
The Payment Platforms Trap
• Paid them on Venmo?
• Used PayPal Friends & Family?
• Paid via Zelle?
• Used ACH or wire transfers?
👉 The IRS doesn’t care how you paid. If the person qualifies for a 1099, you must issue one. Payment method doesn’t replace reporting obligations.
W-9: The Form That Protects You
Before you pay any contractor:
✅ Have them fill out Form W-9
✅ Get their legal name, tax ID, and business structure
✅ Keep this on file in case the IRS comes knocking
👉 This simple habit saves startup founders thousands in fines.
A Quick 1099/Payroll Startup Survival Table
| Scenario | Form | Deadline | Tax Withholding |
|---|---|---|---|
| Contractor | 1099-NEC | Jan 31 | None |
| Employee | W-2 | Jan 31 | Yes |
| Paid under $600 | Usually no 1099 | — | — |
Why Most Startups Struggle with This
• They’re too busy.
• They don’t know the rules.
• They wait until tax season (when it’s too late).
• They forget contractors paid early in the year.
• They didn’t collect W-9s upfront.
And suddenly, the simple joy of hiring becomes a costly IRS problem.
This Is Why Blu Hat Bookkeeping Exists
At Blu Hat Bookkeeping, we help startup founders:
✅ Set up bulletproof contractor and payroll systems
✅ Collect W-9s before the first payment
✅ Track every dollar paid to contractors and employees
✅ Prepare and file 1099s and W-2s on time
✅ Sleep better knowing compliance is handled
You build the company. We’ll handle the messy back-end paperwork.
👉 Don’t let simple tax forms become expensive mistakes. Book your free discovery call today.
Blu Hat Bookkeeping — keeping founders out of tax trouble since day one.

